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protein-mcp-server

MCP server by github.com/cyanheads/protein-mcp-server

MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.

4 starsnpm: protein-mcp-server

About protein-mcp-server

protein-mcp-server is an MCP (Model Context Protocol) server published by cyanheads in the official MCP registry, listed under Search on Loomal. MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.

It ships as an npm package (protein-mcp-server), so any MCP client that can launch a local process can run it.

Development happens in the open at github.com/cyanheads/protein-mcp-server, where the project has earned 4 GitHub stars.

Use protein-mcp-server with your agent

Claude Code · one command
claude mcp add protein-mcp-server -- npx -y protein-mcp-server
Claude Desktop, Cursor & other MCP clients · config
{
  "mcpServers": {
    "protein-mcp-server": {
      "command": "npx",
      "args": [
        "-y",
        "protein-mcp-server"
      ]
    }
  }
}
npmprotein-mcp-server

Frequently asked questions

What is protein-mcp-server?
protein-mcp-server is an MCP (Model Context Protocol) server by cyanheads in the Search category. MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.
How do I connect protein-mcp-server to Claude, Cursor, or another MCP client?
Install protein-mcp-server from its npm package (protein-mcp-server) and register it under "mcpServers" in your client's MCP configuration — for example claude_desktop_config.json or Cursor's mcp.json — then restart the client.
Is protein-mcp-server open source?
Yes — the source code is public at github.com/cyanheads/protein-mcp-server, with 4 GitHub stars.
Can AI agents pay to use protein-mcp-server?
Not yet through Loomal — protein-mcp-server is listed as a free directory entry. If its maintainer verifies ownership, they can set per-call USDC pricing that agents pay over x402, with settlement on Base.

Listing data from the official MCP registry and GitHub, refreshed periodically. Not affiliated with the maintainer unless claimed. Maintain protein-mcp-server? Claim this listing free by verifying GitHub ownership, or contact us.