ENCODE Toolkit

About ENCODE Toolkit

Use ENCODE Toolkit with your agent

claude mcp add encode-toolkit -- npx -y encode-toolkit

{
  "mcpServers": {
    "encode-toolkit": {
      "command": "npx",
      "args": [
        "-y",
        "encode-toolkit"
      ]
    }
  }
}

Frequently asked questions

What is ENCODE Toolkit?

ENCODE Toolkit is an MCP (Model Context Protocol) server by ammawla in the Search category. 20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines

How do I connect ENCODE Toolkit to Claude, Cursor, or another MCP client?

Install ENCODE Toolkit from its npm package (encode-toolkit) and register it under "mcpServers" in your client's MCP configuration — for example claude_desktop_config.json or Cursor's mcp.json — then restart the client.

Is ENCODE Toolkit open source?

Yes — the source code is public at github.com/ammawla/encode-toolkit, with 35 GitHub stars.

Can AI agents pay to use ENCODE Toolkit?

Not yet through Loomal — ENCODE Toolkit is listed as a free directory entry. If its maintainer verifies ownership, they can set per-call USDC pricing that agents pay over x402, with settlement on Base.