Emdb is an MCP (Model Context Protocol) server by pipeworx-io in the Databases category. EMDB (EBI Electron Microscopy Data Bank) MCP — keyless.

How do I connect Emdb to Claude, Cursor, or another MCP client?

Emdb is a remote MCP server — add its endpoint (https://gateway.pipeworx.io/emdb/mcp) to your client's MCP configuration (for example with "claude mcp add", or under "mcpServers" in Cursor's mcp.json) and restart the client.

Yes — the source code is public at github.com/pipeworx-io/mcp-emdb.

Can AI agents pay to use Emdb?

Not yet through Loomal — Emdb is listed as a free directory entry. If its maintainer verifies ownership, they can set per-call USDC pricing that agents pay over x402, with settlement on Base.

Emdb

MCP server by github.com/pipeworx-io/mcp-emdb

EMDB (EBI Electron Microscopy Data Bank) MCP — keyless.

0 starsRemote-capable

About Emdb

Emdb is an MCP (Model Context Protocol) server published by pipeworx-io in the official MCP registry, listed under Databases on Loomal. EMDB (EBI Electron Microscopy Data Bank) MCP — keyless.

Emdb runs as a hosted remote over streamable-http — MCP clients connect directly to its endpoint, with nothing to install locally.

Development happens in the open at github.com/pipeworx-io/mcp-emdb.

Use Emdb with your agent

Claude Code · one command

claude mcp add --transport http emdb https://gateway.pipeworx.io/emdb/mcp

Claude Desktop, Cursor & other MCP clients · config

{
  "mcpServers": {
    "emdb": {
      "url": "https://gateway.pipeworx.io/emdb/mcp"
    }
  }
}

streamable-httphttps://gateway.pipeworx.io/emdb/mcp

Frequently asked questions

What is Emdb?: Emdb is an MCP (Model Context Protocol) server by pipeworx-io in the Databases category. EMDB (EBI Electron Microscopy Data Bank) MCP — keyless.
How do I connect Emdb to Claude, Cursor, or another MCP client?: Emdb is a remote MCP server — add its endpoint (https://gateway.pipeworx.io/emdb/mcp) to your client's MCP configuration (for example with "claude mcp add", or under "mcpServers" in Cursor's mcp.json) and restart the client.
Is Emdb open source?: Yes — the source code is public at github.com/pipeworx-io/mcp-emdb.
Can AI agents pay to use Emdb?: Not yet through Loomal — Emdb is listed as a free directory entry. If its maintainer verifies ownership, they can set per-call USDC pricing that agents pay over x402, with settlement on Base.

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Listing data from the official MCP registry and GitHub, refreshed periodically. Not affiliated with the maintainer unless claimed. Maintain Emdb? Claim this listing free by verifying GitHub ownership, or contact us.